---
title: "Main Features"
canonical: "https://help.biobam.com/space/BCD/190349441/Main%20Features"
format: markdown
---
- Perform Blast, in the cloud or locally, directly from the Blast2GO Command Line
- Perform InterProScan, in the cloud or publicly through EBI (both need an internet connection)
- Easy GO database setup and updates with MongoDB
- Run Blast2GO CLI on your own servers and control all analysis steps from the command line
- Automate your functional annotation
- Reproduce your results in a consistent manner
- Handle hundreds of thousands of sequences
- Design advanced annotation strategies
- Integrate Blast2GO into your existing analysis pipelines
- Import BLAST and InterProScan results obtained outside Blast2GO
- Automatically generate PDF reports
- Work consistent and effectively once you defined the right settings for your analysis