---
title: "Hands On Session 4: cell type-level analysis in R"
canonical: "https://help.biobam.com/space/BTP/3312910354/Hands%20On%20Session%204%3A%20cell%20type-level%20analysis%20in%20R"
format: markdown
---
**Duration:** 1h and 15min

**Hands-on material:**

- [Link to Drive](https://drive.google.com/drive/folders/1gaoZSLc1-kOqXNMzonbxKCVBk9Bryy_P?usp=drive_link)
  - Data and scripts: `/HandsOn4_CellType_Analysis` folder
  - Script: `hands-on-session4_cell-type-level-analysis.Rmd`


**Outline:**

- Assignment of cell labels using a reference dataset.
- Identification of marker genes for clusters for *de novo* cell label assignment.
- Differential expression analysis.
- Differential abundance analysis.