---
title: "Internal Stuff"
canonical: "https://help.biobam.com/space/DOC/833605/Internal%20Stuff"
format: markdown
---
ShortCuts:  Edit a Page:  Mac/Linux: ALT + CTRL + E Windows: SHIFT + ALT + E  Delete Page:  Add page id to the end of the follwing URL https://biobam.atlassian.net/wiki/pages/removepage.action?pageId= Configure Pages, Layout, PDF, etc.: https://biobam.atlassian.net/wiki/spaces/viewspacesummary.action?key=DOC Export Space as PDF: https://biobam.atlassian.net/wiki/spaces/flyingpdf/flyingpdf.action?key=DOC Reorder Pages:  https://biobam.atlassian.net/wiki/pages/reorderpages.action?key=DOC Create blank Page: https://biobam.atlassian.net/wiki/pages/createpage.action?src=quick-create&spaceKey=DOC Create User Manual Template Page: https://biobam.atlassian.net/wiki/pages/createpage-entervariables.action?templateId=808679&spaceKey=DOC&title=&newSpaceKey=DOC TODO List: Figure and Section links Annotate GOs from Blast Descriptions Load GFF - added in Tools menu at Load section Export GFF3 - added in Tools menu at Export section Load Fasta from Reference - It is in tools.... Load Sequences from BioMart - it is in the Tools menu at Load section Table Section? add section to Create ID List or Value List charts - Tag Statistics - could be added if we explain the Tags on the Table Section Blast - Hsp-Hit Coverage (Advanced Conf.) change image Blast - Taxonomy Filter is in the Blast conf page change image Select - Extract Selection to New Tab Analysis Menu - Coding Potential - anchor to CPAT PSORTb Manual missing!!!!! Analysis Menu - link to PSORTb manual Tools Menu - link to NCBI submission manual  Enzyme Code Data in Preferences Add COG Manual Analysis Menu - Link to COG Manual To revise List: 1st sentence in Run InterProScan section not true.... needs to be revised. In Mapping chapter speaks about Generic Table - Now there is only one table (See Generic Table section  1.4.2.2  to manipulate/extract the results from this table.) Sections to be removed: Help Menu - Table Legend Export B2G Table - Now there is only one table Select - sort by selection - has been removed Select - Create ID List From Selection - has been removed now it is possible to do with context menu Select - Hide Unselected sequences Template Style Guide and Example Elements  References to functionality or programs are  bold E.g.  Blast2GO  or  Find Longest ORF No quotes! If you want to use special character (e.g. → ), make sure they appears in the PDF The first letter of all main words in a heading should be capitalized e.g.  Convert to Blast2GO Project Everything must be organized in sections - will result in better PDF formatting Page Content at the beginning of each page obligatory Optional Video tutorial to the right of the page contents Figures Numbering per page Figure 2:  Caption text. Sizes All images must have a fix width 3 column images: 440px each 2 column images: ?? Screenshots 600px Menu items ?? Tables With caption ? Anchors Begging of each page has an anchor Figures only have anchors if they are referenced in the text Menu items alá "Go to X" Toolbar  >  Blast  >  Remove Results