# Example Datasets

Canonical: https://help.biobam.com/space/OED0324/

- [Population Structure with ADMIXTURE](https://help.biobam.com/space/OED0324/3516760065.md)
- [Reference-free Isoform Reconstruction with isONpipeline](https://help.biobam.com/space/OED0324/3516760087.md)
- [GBS Data Processing with Freebayes and dDocent](https://help.biobam.com/space/OED0324/3520528386.md)
- [Transcriptomics](https://help.biobam.com/space/OED0324/3525083182.md)
- [Gene-Level Analysis](https://help.biobam.com/space/OED0324/3525083201.md)
- [Transcript-Level Analysis](https://help.biobam.com/space/OED0324/3525083289.md)
- [De Novo Transcriptome Characterization](https://help.biobam.com/space/OED0324/3525083363.md)
- [RNA-Seq BAM File Quality Control](https://help.biobam.com/space/OED0324/3525083456.md)
- [RNA-Seq BAM File Quality Control with RSeQC (Gallus gallus)](https://help.biobam.com/space/OED0324/3525083475.md)
- [RNA-Seq BAM File Quality Control with RSeQC (Drosophila melanogaster)](https://help.biobam.com/space/OED0324/3525083518.md)
- [Genome Analysis](https://help.biobam.com/space/OED0324/3525083556.md)
- [Long Read Prokaryotic Analysis](https://help.biobam.com/space/OED0324/3525083575.md)
- [Short Read Eukaryotic Analysis](https://help.biobam.com/space/OED0324/3525083671.md)
- [Genome Assembly Comparison with QUAST](https://help.biobam.com/space/OED0324/3525083759.md)
- [Genetic Variation](https://help.biobam.com/space/OED0324/3525083872.md)
- [Genetic Variation Annotation Pipeline](https://help.biobam.com/space/OED0324/3525083901.md)
- [GWAS and Gene Set Analysis in OmicsBox](https://help.biobam.com/space/OED0324/3525083994.md)
- [Functional Analysis](https://help.biobam.com/space/OED0324/3525084048.md)
- [Functional Annotation](https://help.biobam.com/space/OED0324/3525084067.md)
- [Pathway Analysis](https://help.biobam.com/space/OED0324/3525084170.md)
- [Metagenomics](https://help.biobam.com/space/OED0324/3525084223.md)
- [Taxonomic Classification with Kraken 2](https://help.biobam.com/space/OED0324/3525084257.md)
- [Functional Characterization](https://help.biobam.com/space/OED0324/3525084297.md)
- [Single Cell Data Analysis](https://help.biobam.com/space/OED0324/3525084357.md)
- [Single-Cell Clustering](https://help.biobam.com/space/OED0324/3525084376.md)
- [scRNA-seq Differential Expression](https://help.biobam.com/space/OED0324/3525084499.md)
- [scRNA-seq Trajectory Inference](https://help.biobam.com/space/OED0324/3525084530.md)
- [Long Read Data Analysis](https://help.biobam.com/space/OED0324/3525084663.md)
- [Long Reads Quality Assessment](https://help.biobam.com/space/OED0324/3525084682.md)
- [PacBio pre-processing and isoform identification with IsoSeq](https://help.biobam.com/space/OED0324/3525084719.md)
- [Long-Read Isoform Identification with FLAIR](https://help.biobam.com/space/OED0324/3525084750.md)
- [Long Reads Transcriptome Analysis with SQANTI3](https://help.biobam.com/space/OED0324/3525084821.md)
- [Blog / Videos / Tips and Tricks](https://help.biobam.com/space/OED0324/3525084879.md)
- [Reads Demultiplexing with Cutadapt](https://help.biobam.com/space/OED0324/3525084904.md)
- [Example Datasets](https://help.biobam.com/space/OED0324/3525574741.md)
- [Long-Read Isoform Identification and Quantification with IsoQuant](https://help.biobam.com/space/OED0324/3539337217.md)
- [scRNA-seq Autocorrelation with Monocle3](https://help.biobam.com/space/OED0324/3541008483.md)
- [General Tools](https://help.biobam.com/space/OED0324/3558572102.md)
- [Combining Transcriptomes with TAMA Merge](https://help.biobam.com/space/OED0324/3676962822.md)
- [scRNA-Seq Standard Pipeline](https://help.biobam.com/space/OED0324/4011098113.md)
- [End-to-End De Novo Transcriptomics Workflow](https://help.biobam.com/space/OED0324/4824793089.md)
- [Time Course Analysis](https://help.biobam.com/space/OED0324/4866637826.md)
- [Gene Co-Expression Analysis](https://help.biobam.com/space/OED0324/4935614466.md)

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Generated: 2026-09-23T22:45:42.118Z